siemens-healthineers: sync data card, pipeline grid and figures with GitHub
Browse filesSyncs the siemens-healthineers card, pipeline and figures on the Hub with the reviewed state on GitHub (open-h/OpenH-RF).
`pipeline.yaml` gains the `parameters` block the reference reconstructions were made with: a 36 x 35 mm field of view (the RF runs out at 40.7 mm), `n_ch: 2` for the baseband IQ, all transmits, and a -60 dB dynamic range. The grid is 1014 x 986, which is isotropic at ~35.5 um in both directions; the stored `data/image` is itself exactly isotropic at 0.0791 mm, so the earlier implied grid stretched every reconstruction about 12% vertically against that reference.
Corrects the frame counts: 4,539 frames in total, 4,128 of them from the second acquisition round (Subjects 04-15), not 4,541 and 4,130. Acquisition and subject counts are unchanged.
Adds the four figures. `assets/anatomies.png` is the strip the card now leads with — four anatomies beamformed from `data/raw_data` — and `assets/Subject_03_acq_008.gif` is a ten-frame carotid loop whose caption points out that `custom/contact` marks frame 0 as off-subject, so per-frame flags should drive frame selection. The Data Validation paragraph ended mid-sentence where it referred to the reference B-modes; it now points at `assets/`. `assets/main.png` (release image) and `assets/Subject_01_acq_006_recon.png` come along for parity with the GitHub assets folder and are not embedded in the card.
The card also gains the `zea process` one-liner that renders any acquisition straight from the Hub.
Files changed: 6.
```
+ siemens-healthineers/assets/Subject_01_acq_006_recon.png
+ siemens-healthineers/assets/Subject_03_acq_008.gif
+ siemens-healthineers/assets/anatomies.png
+ siemens-healthineers/assets/main.png
~ siemens-healthineers/README.md
~ siemens-healthineers/pipeline.yaml
```
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# Data Card — Siemens In-vivo Raw Ultrasound Channel Data
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## Dataset Description
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This is an in-vivo full-synthetic-aperture (FSA) ultrasound raw channel-data
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**Current OpenH-RF release:** 590 HDF5 files; 228.54 GB (228,538,449,920 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
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- **590 acquisitions (4,
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dataset: 51 acquisitions / 411 frames (Subjects 01–03) from the first
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acquisition round and 539 acquisitions / 4,
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the second.
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- **File naming:** one HDF5 per acquisition, `Subject_XX_acq_NNN.hdf5`
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(acquisitions numbered per subject in acquisition order).
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## Data Validation
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[`pipeline.yaml`](pipeline.yaml). `data/image` is produced by this same
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pipeline at conversion time, so `reconstruct.py` reproduces it
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## Known Issues
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# Data Card — Siemens In-vivo Raw Ultrasound Channel Data
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Four of the anatomies in this dataset, each beamformed from `data/raw_data`:
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`Subject_03_acq_018`, `Subject_02_acq_004`, `Subject_03_acq_008`,
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`Subject_05_acq_031`.
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`zea` renders any acquisition straight from the Hub with the
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`pipeline.yaml` in this folder. Try it out with the following command:
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```bash
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zea process \
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--dataset hf://nvidia/OpenH-RF/siemens-healthineers/data/Subject_03_acq_008.hdf5 \
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--config hf://nvidia/OpenH-RF/siemens-healthineers/pipeline.yaml
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```
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## Dataset Description
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This is an in-vivo full-synthetic-aperture (FSA) ultrasound raw channel-data
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**Current OpenH-RF release:** 590 HDF5 files; 228.54 GB (228,538,449,920 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
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- **590 acquisitions (4,539 frames) from 15 subjects**, one continuous
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dataset: 51 acquisitions / 411 frames (Subjects 01–03) from the first
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acquisition round and 539 acquisitions / 4,128 frames (Subjects 04–15) from
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the second.
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- **File naming:** one HDF5 per acquisition, `Subject_XX_acq_NNN.hdf5`
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(acquisitions numbered per subject in acquisition order).
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## Data Validation
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[`pipeline.yaml`](pipeline.yaml). `data/image` is produced by this same
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pipeline at conversion time, so `reconstruct.py` reproduces it — a round-trip
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check that the probe geometry, transmit description, and timing are recorded
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correctly. Reference B-modes rendered by this pipeline are in
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[`assets/`](assets), and the strip at the top of this card is four of them.
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Ten frames of `data/Subject_03_acq_008.hdf5`. `custom/contact` marks the first
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frame as off-subject — use those per-frame flags when picking frames, rather
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than assuming frame 0 is usable.
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## Known Issues
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Git LFS Details
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Git LFS Details
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Git LFS Details
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Git LFS Details
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pipeline:
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operations:
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- beamform
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parameters:
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xlims: [-0.018, 0.018]
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zlims: [0.0, 0.035] # RF runs out at 40.7 mm
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# Isotropic pixels (~35.5 um both ways). The stored data/image is exactly
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# isotropic (0.0791 mm over 36 x 40 mm); 1014 x 1100 over 36 x 35 mm is not,
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# and stretched every reconstruction ~12% vertically against the reference.
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grid_size_x: 1014
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grid_size_z: 986
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n_ch: 2 # baseband IQ
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selected_transmits: all
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dynamic_range: [-60, 0]
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pipeline:
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operations:
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- beamform
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